Identificación de aislamientos clínicos de Fusarium spp mediante técnicas moleculares en Colombia.
Resumen
Fusarium
es un género fúngico amplio y diverso de diferentes complejos de
especies, causante de una gran variedad de enfermedades en plantas, productor de
diversas toxinas y representa un importante patógeno oportunista en humanos. La
identificación de las especies de Fusarium ha sido por mucho tiempo una tarea
compleja y controversial. Esto es debido principalmente a la aplicación de diferentes
sistemas taxonómicos y la inherente variabilidad morfológica de algunas de estas
especies. Estas características requieren de la revisión por parte de un experto
micólogo, con el fin de lograr un acertado y confiable diagnóstico, el cual es crucial
en el manejo de enfermedades o infecciones y estudios de diversidad genética. En
Colombia, se ha reportado un incremento anual del 317 % de casos de infecciones
causadas por Fusarium, entre 1995 y 2003, sin embargo en centros especializados a
nivel nacional en micología médica, no se lleva a cabo un diagnóstico a nivel de
especie. El objetivo de este estudio fue el de establecer la identidad de aislamientos
clínicos de Fusarium, mediante el uso de un marcador molecular. Para lograr este
objetivo se llevó a cabo la identificación de los 59 aislamientos mediante consulta en
la base de datos Fusarium-ID con base en secuencias codificantes del factor de
elongación de la traducción EF-1a. Los resultados obtenidos permitieron observar la
agrupación de los 59 aislamientos en tres complejos de especies: Fusarium
oxysporum
(FOSC), Fusarium solani (FSSC) y Fusarium incarnanatum-equiseti
(FIESC). Basado en los resultados, se observa que el uso de las secuencias
codificantes para el factor de elongación de traducción permiten una confiable
clasificación de los aislamientos de origen clínico y permite ratificar la utilidad que
posee este marcador molecular en los distintos complejos de Fusarium.
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PDFReferencias
Alastruey-Izquierdo A, Cuenca-Estrella
M, Monzón A, Mellado E, RodríguezTudela
JL.Antifungal susceptibility profile of clinical
Fusarium spp.isolates identified by molecular
methods.J Antimicrob Chemother [Internet].2008 Apr [cited
Jul 17];61(4):805–9.Available from:
http://www.ncbi.nlm.nih.gov/pubmed/182
Atkins SD, Clark IM. Fungal molecular
diagnostics: a mini review. J Appl Genet
[Internet]. 2004 Jan;45(1):3–15. Available
from:
http://www.ncbi.nlm.nih.gov/pubmed/149
Balajee S a, Borman a M, Brandt ME,
Cano J, Cuenca-Estrella M, Dannaoui E,
et al. Sequence-based identification of
Aspergillus, fusarium, and mucorales
species in the clinical mycology
laboratory: where are we and where
should we go from here? J Clin Microbiol
[Internet]. 2009 Apr [cited 2014 Jul
;47(4):877–84. Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=2668331&tool=pmcentre
z&rendertype=abstract
Bogale M, Wingfield BD, Wingfield MJ,
Steenkamp ET. Species-specific primers
for Fusarium redolens and a PCR-RFLP
technique to distinguish among three
clades of Fusarium oxysporum. FEMS
Microbiol Lett [Internet]. 2007 Jun [cited
Jul 17];271(1):27–32. Available
from:
http://www.ncbi.nlm.nih.gov/pubmed/173
Dyavaiah M, Ramani R, Chu DS,
Ritterband DC, Shah MK, Samsonoff W
a, et al. Molecular characterization,
biofilm analysis and experimental
biofouling study of Fusarium isolates from
recent cases of fungal keratitis in New
York State. BMC Ophthalmol [Internet].
Jan [cited 2014 Jul 17];7:1.
Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=1794232&tool=pmcentre
z&rendertype=abstract
Eltschinger S, Greganova E, Heller M,
Bütikofer P, Altmann M. Eukaryotic
translation elongation factor 1A (eEF1A)
domain I from S. cerevisiae is required
but not sufficient for inter-species
complementation. PLoS One [Internet].
Jan [cited 2014 Jul 17];7(7):e42338.
Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=3408446&tool=pmcentre
z&rendertype=abstract
Geiser DM, del Mar Jiménez-Gasco M,
Kang S, Makalowska I, Veeraraghavan
N, Ward TJ, et al. FUSARIUM-ID v. 1.0:
A DNA Sequence Database for
Identifying Fusarium. Eur J Plant Pathol
[Internet]. 2004 Jun;110(5/6):473–9.
Available from:
http://link.springer.com/10.1023/B:EJPP.
75915.a0
Giraldo DA. Identificación morfológica y
molecular a nivel de especie de
aislamientos del hongo Fusarium
obtenidos a partir de muestras clínicas.
[tesis de maestría]. Medellín: Escuela de
Biociencias, Facultad de Ciencias,
Universidad Nacional de Colombia; 2010
Guilhermetti E, Takahachi G, Shinobu
CS, Svidzinski TIE. Fusarium spp. as
agents of onychomycosis in
immunocompetent hosts. Int J Dermatol
[Internet]. 2007 Aug;46(8):822–6.
Available from:
http://www.ncbi.nlm.nih.gov/pubmed/176
Hall T. 1999. BioEdit: a user-friendly
biological sequence alignment editor and
analysis program for Windows 95/98/NT .
Nucleic Acids Symposium Series 42: 9598
Harrow S a, Farrokhi-Nejad R, Pitman
AR, Scott I a W, Bentley A, Hide C, et al.
Characterisation of New Zealand
Fusarium populations using a polyphasic
approach differentiates the F.
avenaceum/F. acuminatum/F. tricinctum
species complex in cereal and grassland
systems. Fungal Biol [Internet]. Elsevier
Ltd; 2010 Apr [cited 2014 Jul
;114(4):293–311. Available from:
http://www.ncbi.nlm.nih.gov/pubmed/209
Hatsch D, Phalip V, Jeltsch J-M. Use of
genes encoding cellobiohydrolase-C and
topoisomerase II as targets for
phylogenetic analysis and identification of
Fusarium. Res Microbiol [Internet]. 2004
May [cited 2014 Jul 17];155(4):290–6.
Available from:
http://www.ncbi.nlm.nih.gov/pubmed/151
Hennequin C, Benailly N, Silly C, Sorin
M, Scheinmann P, Gaillard JL, et al. In
vitro susceptibilities to amphotericin B ,
itraconazole , and miconazole of
filamentous fungi isolated from patients
with cystic fibrosis . In Vitro
Susceptibilities to Amphotericin B ,
Itraconazole , and Miconazole of
Filamentous Fungi Isolated from P. 1997;
Hinojo MJ, Llorens A, Mateo R, Patiño B,
González-Jaén MT, Jiménez M. Utility of
the polymerase chain reaction-restriction
fragment length polymorphisms of the
intergenic spacer region of the rDNA for
characterizing Gibberella fujikuroi
isolates. Syst Appl Microbiol [Internet].
Nov;27(6):681–8. Available from:
http://www.ncbi.nlm.nih.gov/pubmed/156
Jiménez-Gasco, Jiménez-Díaz.
Development of a Specific Polymerase
Chain Reaction-Based Assay for the
Identification of Fusarium oxysporum f.
sp. ciceris and Its Pathogenic Races 0,
A, 5, and 6. Phytopathology 93: 200209.
Kristensen R, Torp M, Kosiak B, HolstJensen A. Phylogeny and toxigenic
potential is correlated in Fusarium
species as revealed by partial translation
elongation factor 1 alpha gene
sequences. Mycol Res [Internet]. 2005
Feb [cited 2014 Jul 17];109(2):173–86.
Available from:
http://linkinghub.elsevier.com/retrieve/pii/
S0953756208613945
Kvas M, Marasas W, Wingfield B,
Wingfield M, Steenkamp E. Diversity and
evolution of Fusarium species in the
Gibberella fujikuroi complex. Fungal
Diversity 34: 1-21. 2009
Landlinger C, Basková L, Preuner S,
Willinger B, Buchta V, Lion T.
Identification of fungal species by
fragment length analysis of the internally
transcribed spacer 2 region. Eur J Clin
Microbiol Infect Dis [Internet]. 2009 Jun
[cited 2014 Jul 17];28(6):613–22.
Available from:
http://www.ncbi.nlm.nih.gov/pubmed/191
Larkin M a, Blackshields G, Brown NP,
Chenna R, McGettigan P a, McWilliam H,
et al. Clustal W and Clustal X version 2.0.
Bioinformatics [Internet]. 2007 Nov 1
[cited 2014 Jul 9];23(21):2947–8.
Available from:
http://www.ncbi.nlm.nih.gov/pubmed/178
and 2006 Phylogenetic Diversity
and Microsphere Array-Based Geno.
O’Donnell K, Sutton D a, Fothergill A,
McCarthy D, Rinaldi MG, Brandt ME, et
al. Molecular phylogenetic diversity,
multilocus haplotype nomenclature, and
in vitro antifungal resistance within the
Logrieco a, et al. Characterization of
Fusarium spp. isolates by PCR-RFLP
analysis of the intergenic spacer region of
the rRNA gene (rDNA). Int J Food
Microbiol [Internet]. 2006 Feb 15 [cited
Jul 17];106(3):297–306. Available
from:
http://www.ncbi.nlm.nih.gov/pubmed/162
Mateyak MK, Kinzy TG. eEF1A: thinking
outside the ribosome. J Biol Chem
[Internet]. 2010 Jul 9 [cited 2014 Jul
;285(28):21209–13. Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=2898402&tool=pmcentre
z&rendertype=abstract
Nucci M, Anaissie E. Fusarium infections
in immunocompromised patients. Clin
Microbiol Rev [Internet]. 2007 Oct [cited
Jul 15];20(4):695–704. Available
from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=2176050&tool=pmcentre
z&rendertype=abstract
O’Donnell K, Kistler HC, Cigelnik E,
Ploetz RC. Multiple evolutionary origins
of the fungus causing Panama disease of
banana: concordant evidence from
nuclear and mitochondrial gene
genealogies. Proc Natl Acad Sci U S A
[Internet]. 1998 Mar 3;95(5):2044–9.
Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=19243&tool=pmcentrez&
Pathogenic Fusaria , Including Isolates
from the Multistate Contact LensAssociated
U
. S . Keratitis Outbreaks of
O’Donnell K, Gueidan C, Sink S,
Johnston PR, Crous PW, Glenn A, et al.
A two-locus DNA sequence database for
typing plant and human pathogens within
the Fusarium oxysporum species
complex. Fungal Genet Biol [Internet].
Elsevier Inc.; 2009 Dec [cited 2014 Jul
;46(12):936–48. Available from:
http://www.ncbi.nlm.nih.gov/pubmed/197
O’Donnell K, Sutton D a, Rinaldi MG,
Sarver B a J, Balajee SA, Schroers H-J,
et al. Internet-accessible DNA sequence
database for identifying fusaria from
human and animal infections. J Clin
Microbiol [Internet]. 2010 Oct [cited 2014
Jul 17];48(10):3708–18. Available from:
http://www.pubmedcentral.nih.gov/articler
ender.fcgi?artid=2953079&tool=pmcentre
z&rendertype=abstract
Park B, Park J, Cheong K-C, Choi J,
Jung K, Kim D, et al. Cyber infrastructure
for Fusarium: three integrated platforms
supporting strain identification,
phylogenetics, comparative genomics
and knowledge sharing. Nucleic Acids
Sambrook J. Fritsch E, Maniatis T.
Molecular Cloning: a laboratory manual.
New York. Third edition. Editorial Cold
Spring Harbor Laboratory Press, 999 p.
Sampietro D a, Marín P, Iglesias J,
Presello D a, Vattuone M a, Catalan C a
N, et al. A molecular based strategy for
rapid diagnosis of toxigenic Fusarium
species associated to cereal grains from
Argentina. Fungal Biol [Internet]. 2010
Jan [cited 2014 Jul 17];114(1):74–81.
Available from:
http://www.ncbi.nlm.nih.gov/pubmed/209
Wilson A, Simpson D, Chandler E,
Jennings P, Nicholson P. Development of
PCR assays for the detection and
differentiation of Fusarium
sporotrichioides and Fusarium
langsethiae. FEMS Microbiol Lett
[Internet]. 2004 Apr 1 [cited 2014 Jul
;233(1):69–76. Available from:
http://www.ncbi.nlm.nih.gov/pubmed/150
Zaccardelli M, Vitale S, Luongo L,
Merighi M, Corazza L. Morphological and
DOI: https://doi.org/10.24054/01204211.v1.n1.2014.1825
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